HL_9E6Q_058

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

AGUCCCCAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_058 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.2174

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9E6Q|1|1|A|2585
9E6Q|1|1|G|2586
9E6Q|1|1|U|2587
9E6Q|1|1|C|2588
9E6Q|1|1|C|2589
9E6Q|1|1|C|2590
9E6Q|1|1|C|2591
9E6Q|1|1|A|2592
9E6Q|1|1|U|2593

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AN

Large ribosomal subunit protein uL16

Chain Ag

Large ribosomal subunit protein eL40