HL_9E6Q_064

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9E6Q|1|1|G|2863, 9E6Q|1|1|C|2867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9E6Q|1|1|C|2857
9E6Q|1|1|U|2858
9E6Q|1|1|G|2859
9E6Q|1|1|A|2860
9E6Q|1|1|A|2861
9E6Q|1|1|A|2862
9E6Q|1|1|G|2863
9E6Q|1|1|C|2864
9E6Q|1|1|A|2865
9E6Q|1|1|U|2866
9E6Q|1|1|C|2867
9E6Q|1|1|U|2868
9E6Q|1|1|A|2869
9E6Q|1|1|A|2870
9E6Q|1|1|G|2871

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AE

Large ribosomal subunit protein uL6

Chain AG

Large ribosomal subunit protein uL13

Chain Ag

Large ribosomal subunit protein eL40