HL_9E6Q_066

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUAGAAGAC

Length

9 nucleotides

Bulged bases

9E6Q|1|1|U|2939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_066 not in the Motif Atlas

Homologous match to HL_4V9F_069

Geometric discrepancy: 0.1356

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9E6Q|1|1|G|2938
9E6Q|1|1|U|2939
9E6Q|1|1|A|2940
9E6Q|1|1|G|2941
9E6Q|1|1|A|2942
9E6Q|1|1|A|2943
9E6Q|1|1|G|2944
9E6Q|1|1|A|2945
9E6Q|1|1|C|2946

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AT

Large ribosomal subunit protein uL22

Chain Aa

Large ribosomal subunit protein eL31