HL_9E7E_002

3D structure

PDB id

9E7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HIV-1 RRE SLII A31CG39C mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GAAACAC

Length

7 nucleotides

Bulged bases

9E7E|1|C|A|50, 9E7E|1|C|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_64036.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

27

Unit IDs

9E7E|1|C|G|49
9E7E|1|C|A|50
9E7E|1|C|A|51
9E7E|1|C|A|52
9E7E|1|C|C|53
9E7E|1|C|A|54
9E7E|1|C|C|55

Current chains

Chain C

Rev Response Element SLII A31C/G39C

Nearby chains

Chain A

BL3-6 Fab heavy chain

Chain B

BL3-6 Fab light chain