HL_9EBB_008

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAUAUAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_008 not in the Motif Atlas

Homologous match to HL_8B0X_037

Geometric discrepancy: 0.2764

The information below is about HL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9EBB|1|I|U|160
9EBB|1|I|G|161
9EBB|1|I|A|162
9EBB|1|I|A|163
9EBB|1|I|U|164
9EBB|1|I|A|165
9EBB|1|I|U|166
9EBB|1|I|A|167
9EBB|1|I|U|168
9EBB|1|I|A|169
9EBB|1|I|G|170

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain y

Large ribosomal subunit protein bL28