HL_9EBB_009

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9EBB|1|I|A|198, 9EBB|1|I|A|201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_009 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1308

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9EBB|1|I|G|196
9EBB|1|I|A|197
9EBB|1|I|A|198
9EBB|1|I|A|199
9EBB|1|I|C|200
9EBB|1|I|A|201
9EBB|1|I|U|202
9EBB|1|I|C|203

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain y

Large ribosomal subunit protein bL28