HL_9EBB_065

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGUGGAAG

Length

10 nucleotides

Bulged bases

9EBB|1|I|A|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_065 not in the Motif Atlas

Homologous match to HL_8B0X_086

Geometric discrepancy: 0.1532

The information below is about HL_8B0X_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9EBB|1|I|C|2642
9EBB|1|I|G|2643
9EBB|1|I|A|2644
9EBB|1|I|G|2645
9EBB|1|I|U|2646
9EBB|1|I|G|2647
9EBB|1|I|G|2648
9EBB|1|I|A|2649
9EBB|1|I|A|2650
9EBB|1|I|G|2651

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15