HL_9EBV_001

3D structure

PDB id

9EBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with lumichrome

Experimental method

X-RAY DIFFRACTION

Resolution

2.519 Å

Loop

Sequence

GUUGGUAGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98864.4

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9EBV|1|A|G|21
9EBV|1|A|U|22
9EBV|1|A|U|23
9EBV|1|A|G|24
9EBV|1|A|G|25
9EBV|1|A|U|26
9EBV|1|A|A|27
9EBV|1|A|G|28
9EBV|1|A|U|29
9EBV|1|A|C|30

Current chains

Chain A

RNA (81-MER)

Nearby chains

Chain M

azaaromatic riboswitch aptamer (yjdF RNA)