HL_9EC3_016

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

9EC3|1|I|G|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EC3_016 not in the Motif Atlas

Homologous match to HL_8B0X_045

Geometric discrepancy: 0.1422

The information below is about HL_8B0X_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9EC3|1|I|G|499
9EC3|1|I|G|500
9EC3|1|I|A|501
9EC3|1|I|C|502
9EC3|1|I|C|503
9EC3|1|I|A|504
9EC3|1|I|C|505
9EC3|1|I|C|506

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15