HL_9EC3_054

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

9EC3|1|I|A|2268, 9EC3|1|I|A|2269, 9EC3|1|I|G|2270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EC3_054 not in the Motif Atlas

Homologous match to HL_8B0X_078

Geometric discrepancy: 0.156

The information below is about HL_8B0X_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9EC3|1|I|G|2265
9EC3|1|I|U|2266
9EC3|1|I|A|2267
9EC3|1|I|A|2268
9EC3|1|I|A|2269
9EC3|1|I|G|2270
9EC3|1|I|A|2271
9EC3|1|I|U|2272
9EC3|1|I|G|2273
9EC3|1|I|C|2274

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3