HL_9EC3_057

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9EC3|1|I|G|2488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EC3_057 not in the Motif Atlas

Homologous match to HL_8B0X_080

Geometric discrepancy: 0.1786

The information below is about HL_8B0X_080

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9EC3|1|I|C|2486
9EC3|1|I|U|2487
9EC3|1|I|G|2488
9EC3|1|I|G|2489
9EC3|1|I|G|2490
9EC3|1|I|G|2491
9EC3|1|I|C|2492
9EC3|1|I|G|2493
9EC3|1|I|G|2494

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27

Chain u

Transfer RNA; tRNA