HL_9EC3_070

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9EC3|1|I|G|2989, 9EC3|1|I|C|2993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EC3_070 not in the Motif Atlas

Homologous match to HL_8B0X_093

Geometric discrepancy: 0.1653

The information below is about HL_8B0X_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

9EC3|1|I|C|2983
9EC3|1|I|U|2984
9EC3|1|I|G|2985
9EC3|1|I|A|2986
9EC3|1|I|A|2987
9EC3|1|I|A|2988
9EC3|1|I|G|2989
9EC3|1|I|C|2990
9EC3|1|I|A|2991
9EC3|1|I|U|2992
9EC3|1|I|C|2993
9EC3|1|I|U|2994
9EC3|1|I|A|2995
9EC3|1|I|A|2996
9EC3|1|I|G|2997

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13