HL_9EC3_106
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 9EC3|1|n|U|37
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EC3_106 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.2246
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_87306.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9EC3|1|n|G|32
9EC3|1|n|C|33
9EC3|1|n|U|34
9EC3|1|n|C|35
9EC3|1|n|A|36
9EC3|1|n|U|37
9EC3|1|n|A|38
9EC3|1|n|A|39
9EC3|1|n|C|40
Current chains
- Chain n
- E-tRNA, fMet-tRNA(fMet)
Nearby chains
- Chain X
- mRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
- Chain u
- Transfer RNA; tRNA
Coloring options: