HL_9ED0_003

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

9ED0|1|2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_003 not in the Motif Atlas

Geometric match to HL_8CRE_193

Geometric discrepancy: 0.0834

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9ED0|1|2|G|156
9ED0|1|2|U|157
9ED0|1|2|A|158
9ED0|1|2|A2M|159
9ED0|1|2|U|160
9ED0|1|2|U|161
9ED0|1|2|C|162

Current chains

Chain 2

rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

40S ribosomal protein S24