9ED0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9ED0_001 | 1/2/7:17 | No text annotation | geometric HL_8CRE_191 HL_73535.1 | |
| HL_9ED0_002 | 1/2/69:80 | No text annotation | ||
| HL_9ED0_003 | 1/2/156:162 | GNRA related | geometric HL_8CRE_193 HL_34789.4 | |
| HL_9ED0_004 | 1/2/288:295 | T-loop with 1 bulged base | geometric HL_8CRE_196 HL_67772.1 | |
| HL_9ED0_005 | 1/2/377:387 | No text annotation | ||
| HL_9ED0_006 | 1/2/416:421 | GNRA variation | geometric HL_8CRE_199 HL_34789.4 | |
| HL_9ED0_007 | 1/2/441:452 | No text annotation | geometric HL_8CRE_200 HL_86432.1 | |
| HL_9ED0_008 | 1/2/462:467 | UNCG | geometric HL_4LFB_009 HL_61337.3 | |
| HL_9ED0_009 | 1/2/498:504 | No text annotation | geometric HL_8P9A_207 HL_89167.2 | |
| HL_9ED0_010 | 1/2/535:548 | No text annotation | ||
| HL_9ED0_011 | 1/2/569:581 | No text annotation | geometric HL_8CRE_204 HL_68749.1 | |
| HL_9ED0_012 | 1/2/618:623 | No text annotation | geometric HL_8CRE_205 HL_93535.2 | |
| HL_9ED0_013 | 1/2/820:828 | No text annotation | geometric HL_8CRE_207 HL_11974.2 | |
| HL_9ED0_014 | 1/2/957:966 | No text annotation | geometric HL_8CRE_210 HL_38491.2 | |
| HL_9ED0_015 | 1/2/994:999 | GNRA | geometric HL_8P9A_210 HL_34789.4 | |
| HL_9ED0_016 | 1/2/1054:1064 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_9ED0_017 | 1/2/1114:1119 | No text annotation | ||
| HL_9ED0_018 | 1/2/1141:1146 | GNRA | geometric HL_8CRE_214 HL_34789.4 | |
| HL_9ED0_019 | 1/2/1178:1183 | GNRA | geometric HL_6N2V_002 HL_34789.4 | |
| HL_9ED0_020 | 1/2/1245:1254 | No text annotation | geometric HL_8CRE_216 HL_97521.1 | |
| HL_9ED0_021 | 1/2/1295:1304 | GNRA wlth extra near cWW | geometric HL_8CRE_217 HL_98423.3 | |
| HL_9ED0_022 | 1/2/1353:1358 | GNRA | geometric HL_7KKV_001 HL_34789.4 | |
| HL_9ED0_023 | 1/2/1366:1373 | T-loop related | geometric HL_8P9A_218 HL_63894.2 | |
| HL_9ED0_024 | 1/2/1460:1466 | GNRA | geometric HL_4C7O_001 HL_34789.4 | |
| HL_9ED0_025 | 1/2/1565:1570 | GNRA | geometric HL_3E5C_002 HL_34789.4 | |
| HL_9ED0_026 | 1/2/1614:1625 | No text annotation | geometric HL_8CRE_223 HL_50951.1 | |
| HL_9ED0_027 | 1/2/1658:1666 | T-loop with 1 bulged base | geometric HL_8CRE_224 HL_61418.2 | |
| HL_9ED0_028 | 1/2/1847:1852 | GNRA | geometric HL_4LFB_032 HL_34789.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9ED0_001 | 1/2/23:25, 1/2/649:651 | Isolated non-canonical cWW pair | geometric IL_1U9S_007 IL_01003.3 | |
| IL_9ED0_002 | 1/2/34:36, 1/2/519:521 | Isolated non-canonical cWW pair | geometric IL_9D5J_002 NA | |
| IL_9ED0_003 | 1/2/37:40, 1/2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_9ED0_004 | 1/2/41:47, 1/2/479:481 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_9ED0_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform | geometric IL_8P9A_377 IL_34520.3 | |
| IL_9ED0_006 | 1/2/57:62, 1/2/86:88 | No text annotation | geometric IL_8P9A_378 IL_61299.6 | |
| IL_9ED0_007 | 1/2/63:68, 1/2/81:85 | No text annotation | geometric IL_8P9A_379 IL_21667.2 | |
| IL_9ED0_008 | 1/2/108:110, 1/2/351:353 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_71625.3 | |
| IL_9ED0_009 | 1/2/110:112, 1/2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.3 | |
| IL_9ED0_010 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases | geometric IL_8P9A_381 IL_71421.2 | |
| IL_9ED0_011 | 1/2/116:121, 1/2/343:347 | No text annotation | geometric IL_8CRE_399 IL_31545.1 | |
| IL_9ED0_012 | 1/2/145:151, 1/2/167:174 | No text annotation | geometric IL_8CRE_400 IL_24485.1 | |
| IL_9ED0_013 | 1/2/152:154, 1/2/164:166 | Isolated cWH basepair | geometric IL_3CZW_001 IL_10892.2 | |
| IL_9ED0_014 | 1/2/188:192, 1/2/207:211 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 NA | |
| IL_9ED0_015 | 1/2/216:219, 1/2/302:309 | No text annotation | ||
| IL_9ED0_016 | 1/2/312:314, 1/2/336:337 | Single bulged A | geometric IL_8P9A_388 IL_14190.2 | |
| IL_9ED0_017 | 1/2/317:319, 1/2/332:333 | Single stack bend | geometric IL_8OI5_137 IL_15011.2 | |
| IL_9ED0_018 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking | geometric IL_8CRE_408 IL_46174.4 | |
| IL_9ED0_019 | 1/2/366:371, 1/2/393:394 | No text annotation | geometric IL_8CRE_409 IL_01372.1 | |
| IL_9ED0_020 | 1/2/411:413, 1/2/424:429 | No text annotation | geometric IL_8CRE_410 IL_93336.1 | |
| IL_9ED0_021 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.2 | |
| IL_9ED0_022 | 1/2/459:461, 1/2/468:470 | No text annotation | geometric IL_8CRE_412 IL_42997.5 | |
| IL_9ED0_023 | 1/2/487:489, 1/2/511:512 | Single bulged U | geometric IL_8P9A_396 IL_97561.3 | |
| IL_9ED0_024 | 1/2/491:495, 1/2/508:509 | C-loop | geometric IL_8P9A_397 IL_26900.1 | |
| IL_9ED0_025 | 1/2/495:496, 1/2/506:508 | Single bulged G | geometric IL_8P9A_398 IL_28408.2 | |
| IL_9ED0_026 | 1/2/530:531, 1/2/553:555 | No text annotation | ||
| IL_9ED0_027 | 1/2/534:535, 1/2/548:550 | Other IL | geometric IL_1J9H_005 NA | |
| IL_9ED0_028 | 1/2/563:565, 1/2/585:592 | No text annotation | geometric IL_8CRE_418 IL_02511.1 | |
| IL_9ED0_029 | 1/2/566:569, 1/2/581:584 | tSH-tHW | geometric IL_5UNE_005 IL_76776.1 | |
| IL_9ED0_030 | 1/2/599:606, 1/2/636:637 | SSU/LSU pseudoknot | geometric IL_8CRE_421 IL_11411.1 | |
| IL_9ED0_031 | 1/2/606:608, 1/2/635:636 | Single bulged U | geometric IL_3D2V_001 IL_97561.3 | |
| IL_9ED0_032 | 1/2/611:617, 1/2/624:632 | No text annotation | geometric IL_8CRE_423 IL_52042.1 | |
| IL_9ED0_033 | 1/2/663:665, 1/2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.3 | |
| IL_9ED0_034 | 1/2/665:671, 1/2/1161:1162 | No text annotation | geometric IL_8CRE_424 IL_20847.1 | |
| IL_9ED0_035 | 1/2/673:675, 1/2/1030:1032 | Isolated non-canonical cWW pair | geometric IL_8CRE_425 IL_01003.3 | |
| IL_9ED0_036 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS | geometric IL_8CRE_426 IL_05821.1 | |
| IL_9ED0_037 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop | geometric IL_1S03_007 IL_73108.2 | |
| IL_9ED0_038 | 1/2/805:807, 1/2/856:858 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_01003.3 | |
| IL_9ED0_039 | 1/2/807:815, 1/2/849:856 | No text annotation | ||
| IL_9ED0_040 | 1/2/874:876, 1/2/910:912 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.3 | |
| IL_9ED0_041 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8P9A_417 IL_74641.2 | |
| IL_9ED0_042 | 1/2/925:927, 1/2/1014:1017 | Isolated non-canonical cWW pair | geometric IL_8P9A_418 IL_01003.3 | |
| IL_9ED0_043 | 1/2/928:931, 1/2/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_8P9A_419 IL_15225.2 | |
| IL_9ED0_044 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_15225.2 | |
| IL_9ED0_045 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs | geometric IL_8P9A_421 IL_15225.2 | |
| IL_9ED0_046 | 1/2/952:956, 1/2/967:974 | Kink-turn | geometric IL_9L6Y_001 IL_71972.1 | |
| IL_9ED0_047 | 1/2/1042:1047, 1/2/1071:1073 | No text annotation | geometric IL_8CRE_437 IL_31359.1 | |
| IL_9ED0_048 | 1/2/1047:1051, 1/2/1067:1071 | tSH-tHW-tHS | geometric IL_8CRE_438 IL_05821.1 | |
| IL_9ED0_049 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation | geometric IL_8CRE_439 IL_82706.2 | |
| IL_9ED0_050 | 1/2/1098:1101, 1/2/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_15225.2 | |
| IL_9ED0_051 | 1/2/1101:1103, 1/2/1129:1131 | Isolated cWH basepair | geometric IL_406D_004 NA | |
| IL_9ED0_052 | 1/2/1108:1110, 1/2/1123:1124 | Minor groove platform | geometric IL_8P9A_401 IL_34520.3 | |
| IL_9ED0_053 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4LFB_034 IL_84044.1 | |
| IL_9ED0_054 | 1/2/1203:1204, 1/2/1694:1696 | Single bulged A | geometric IL_5J7L_039 NA | |
| IL_9ED0_055 | 1/2/1206:1208, 1/2/1691:1692 | Single bulged G | geometric IL_8P9A_430 IL_28408.2 | |
| IL_9ED0_056 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | geometric IL_8CRE_445 IL_63596.12 | |
| IL_9ED0_057 | 1/2/1230:1232, 1/2/1526:1528 | Isolated non-canonical cWW pair | geometric IL_8CRE_446 IL_01003.3 | |
| IL_9ED0_058 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | geometric IL_8P9A_433 IL_34520.3 | |
| IL_9ED0_059 | 1/2/1270:1272, 1/2/1510:1512 | Isolated non-canonical cWW pair | geometric IL_6IA2_004 IL_01003.3 | |
| IL_9ED0_060 | 1/2/1281:1290, 1/2/1309:1316 | No text annotation | ||
| IL_9ED0_062 | 1/2/1325:1327, 1/2/1502:1503 | No text annotation | geometric IL_8CRE_451 IL_97561.3 | |
| IL_9ED0_063 | 1/2/1329:1333, 1/2/1498:1500 | No text annotation | geometric IL_8CRE_452 IL_82453.1 | |
| IL_9ED0_064 | 1/2/1329:1335, 1/2/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_9ED0_065 | 1/2/1333:1335, 1/2/1492:1498 | No text annotation | geometric IL_8P9A_440 IL_34117.1 | |
| IL_9ED0_066 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | geometric IL_8CRE_455 IL_14190.2 | |
| IL_9ED0_067 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.2 | |
| IL_9ED0_068 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform | geometric IL_6DLR_003 IL_34520.3 | |
| IL_9ED0_069 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_15225.2 | |
| IL_9ED0_070 | 1/2/1402:1405, 1/2/1441:1444 | No text annotation | geometric IL_8CRE_481 IL_78800.2 | |
| IL_9ED0_071 | 1/2/1408:1409, 1/2/1432:1438 | No text annotation | ||
| IL_9ED0_072 | 1/2/1412:1413, 1/2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_9ED0_073 | 1/2/1416:1417, 1/2/1422:1424 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_9ED0_074 | 1/2/1537:1539, 1/2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 NA | |
| IL_9ED0_075 | 1/2/1541:1550, 1/2/1582:1592 | No text annotation | ||
| IL_9ED0_076 | 1/2/1550:1558, 1/2/1577:1582 | No text annotation | ||
| IL_9ED0_077 | 1/2/1560:1562, 1/2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_8CRE_464 IL_71625.3 | |
| IL_9ED0_078 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | ||
| IL_9ED0_079 | 1/2/1700:1702, 1/2/1833:1836 | No text annotation | geometric IL_8CRE_466 IL_18228.1 | |
| IL_9ED0_080 | 1/2/1702:1705, 1/2/1829:1833 | No text annotation | geometric IL_5J7L_059 NA | |
| IL_9ED0_081 | 1/2/1706:1708, 1/2/1826:1828 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 IL_01003.3 | |
| IL_9ED0_082 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation | geometric IL_8CRE_401 IL_65740.1 | |
| IL_9ED0_083 | 1/2/1714:1716, 1/2/1817:1819 | Isolated non-canonical cWW pair | geometric IL_8P9A_354 IL_01003.3 | |
| IL_9ED0_084 | 1/2/1717:1720, 1/2/1813:1816 | Double sheared | geometric IL_4WF9_087 IL_58355.2 | |
| IL_9ED0_086 | 1/2/1729:1731, 1/2/1803:1805 | Isolated non-canonical cWW pair | geometric IL_8CRE_473 IL_71625.3 | |
| IL_9ED0_087 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared | geometric IL_8P9A_460 IL_58355.2 | |
| IL_9ED0_088 | 1/2/1739:1741, 1/2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.3 | |
| IL_9ED0_089 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared | geometric IL_9DFE_075 IL_15190.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9ED0_061 | No text annotation | ||
| IL_9ED0_085 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9ED0_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | geometric J3_8P9A_068 J3_58657.1 | |
| J3_9ED0_002 | 1/2/40:47, 1/2/479:487, 1/2/512:514 | No text annotation | geometric J3_8P9A_069 J3_63856.1 | |
| J3_9ED0_003 | 1/2/682:685, 1/2/917:922, 1/2/1022:1023 | No text annotation | ||
| J3_9ED0_004 | 1/2/682:685, 1/2/917:923, 1/2/1019:1023 | No text annotation | ||
| J3_9ED0_005 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation | geometric J3_8P9A_073 J3_97642.2 | |
| J3_9ED0_006 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation | geometric J3_8P9A_074 J3_23895.1 | |
| J3_9ED0_007 | 1/2/1094:1096, 1/2/1136:1140, 1/2/1147:1151 | No text annotation | ||
| J3_9ED0_008 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation | geometric J3_8P9A_076 J3_85722.1 | |
| J3_9ED0_009 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | geometric J3_4LFB_003 J3_44359.1 | |
| J3_9ED0_010 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation | geometric J3_8CRE_080 J3_88451.1 | |
| J3_9ED0_011 | 1/2/1272:1277, 1/2/1320:1324, 1/2/1504:1510 | No text annotation | geometric J3_8CRE_081 J3_87797.2 | |
| J3_9ED0_012 | 1/2/1340:1345, 1/2/1384:1389, 1/2/1481:1486 | No text annotation | ||
| J3_9ED0_013 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation | geometric J3_8CRE_083 J3_76043.4 | |
| J3_9ED0_014 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
| J3_9ED0_015 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | geometric J3_8CRE_086 J3_03192.1 | |
| J4_9ED0_001 | 1/2/98:106, 1/2/355:357, 1/2/405:409, 1/2/431:432 | No text annotation | ||
| J4_9ED0_002 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | ||
| J5_9ED0_001 | 1/2/30:34, 1/2/521:527, 1/2/558:563, 1/2/592:595, 1/2/641:644 | No text annotation | ||
| J5_9ED0_002 | 1/2/30:34, 1/2/521:527, 1/2/558:565, 1/2/585:595, 1/2/641:644 | No text annotation | ||
| J5_9ED0_003 | 1/2/53:56, 1/2/89:96, 1/2/434:436, 1/2/457:459, 1/2/470:474 | No text annotation | ||
| J5_9ED0_004 | 1/2/123:129, 1/2/183:185, 1/2/214:215, 1/2/310:312, 1/2/337:341 | No text annotation |
Problematic loops
No problematic loops
Coloring options: