HL_9ED0_006

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_006 not in the Motif Atlas

Geometric match to HL_8CRE_199

Geometric discrepancy: 0.1661

The information below is about HL_8CRE_199

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9ED0|1|2|U|416
9ED0|1|2|C|417
9ED0|1|2|A|418
9ED0|1|2|G|419
9ED0|1|2|G|420
9ED0|1|2|G|421

Current chains

Chain 2

rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS5

Chain J

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein uS8

Chain X

40S ribosomal protein S23