HL_9ED0_007
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9ED0|1|2|C|450, 9ED0|1|2|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9ED0_007 not in the Motif Atlas
- Geometric match to HL_8CRE_200
- Geometric discrepancy: 0.0638
- The information below is about HL_8CRE_200
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9ED0|1|2|C|441
9ED0|1|2|C|442
9ED0|1|2|U|443
9ED0|1|2|G|444
9ED0|1|2|A|445
9ED0|1|2|G|446
9ED0|1|2|A|447
9ED0|1|2|A|448
9ED0|1|2|A|449
9ED0|1|2|C|450
9ED0|1|2|G|451
9ED0|1|2|G|452
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein eS4, X isoform
- Chain G
- Small ribosomal subunit protein eS6
- Chain I
- Small ribosomal subunit protein eS8
- Chain Y
- 40S ribosomal protein S24
Coloring options: