HL_9ED0_008

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

9ED0|1|2|A|464

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_008 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.0689

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

9ED0|1|2|OMC|462
9ED0|1|2|C|463
9ED0|1|2|A|464
9ED0|1|2|A|465
9ED0|1|2|G|466
9ED0|1|2|G|467

Current chains

Chain 2

rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6