HL_9ED0_009

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9ED0|1|2|A|500, 9ED0|1|2|C|502, 9ED0|1|2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_009 not in the Motif Atlas

Geometric match to HL_8P9A_207

Geometric discrepancy: 0.1873

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9ED0|1|2|C|498
9ED0|1|2|G|499
9ED0|1|2|A|500
9ED0|1|2|C|501
9ED0|1|2|C|502
9ED0|1|2|C|503
9ED0|1|2|G|504

Current chains

Chain 2

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain Y

40S ribosomal protein S24