HL_9ED0_021

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9ED0|1|2|U|1300, 9ED0|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_021 not in the Motif Atlas

Geometric match to HL_8CRE_217

Geometric discrepancy: 0.1306

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9ED0|1|2|A|1295
9ED0|1|2|U|1296
9ED0|1|2|U|1297
9ED0|1|2|G|1298
9ED0|1|2|A|1299
9ED0|1|2|U|1300
9ED0|1|2|A|1301
9ED0|1|2|G|1302
9ED0|1|2|C|1303
9ED0|1|2|U|1304

Current chains

Chain 2

rRNA

Nearby chains

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein