HL_9ED0_024

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

9ED0|1|2|U|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_024 not in the Motif Atlas

Geometric match to HL_4C7O_001

Geometric discrepancy: 0.2728

The information below is about HL_4C7O_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9ED0|1|2|C|1460
9ED0|1|2|G|1461
9ED0|1|2|U|1462
9ED0|1|2|U|1463
9ED0|1|2|C|1464
9ED0|1|2|A|1465
9ED0|1|2|G|1466

Current chains

Chain 2

rRNA

Nearby chains

Chain R

Small ribosomal subunit protein eS17

Chain c

Small ribosomal subunit protein eS28

Chain g

Receptor of activated protein C kinase 1