HL_9EDB_001

3D structure

PDB id

9EDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State V - dissociated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EDB_001 not in the Motif Atlas

Geometric match to HL_8CRE_010

Geometric discrepancy: 0.1486

The information below is about HL_8CRE_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9EDB|1|B|A|32
9EDB|1|B|G|33
9EDB|1|B|A|34
9EDB|1|B|A|35
9EDB|1|B|A|36
9EDB|1|B|U|37

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1