HL_9EHO_001
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAGUCGGUAGA
- Length
- 12 nucleotides
- Bulged bases
- 9EHO|1|2|U|16, 9EHO|1|2|C|17, 9EHO|1|2|G|18, 9EHO|1|2|G|19, 9EHO|1|2|U|20, 9EHO|1|2|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_001 not in the Motif Atlas
- Homologous match to HL_1F7U_001
- Geometric discrepancy: 0.4632
- The information below is about HL_1F7U_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55043.2
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
9EHO|1|2|U|12
9EHO|1|2|C|13
9EHO|1|2|A|14
9EHO|1|2|G|15
9EHO|1|2|U|16
9EHO|1|2|C|17
9EHO|1|2|G|18
9EHO|1|2|G|19
9EHO|1|2|U|20
9EHO|1|2|A|21
9EHO|1|2|G|22
9EHO|1|2|A|23
Current chains
- Chain 2
- tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 60S ribosomal protein L11
- Chain QQ
- Small ribosomal subunit protein uS19
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