HL_9EHO_012

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAGCUCC

Length

10 nucleotides

Bulged bases

9EHO|1|5|G|322, 9EHO|1|5|U|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|5|G|321
9EHO|1|5|G|322
9EHO|1|5|U|323
9EHO|1|5|A|324
9EHO|1|5|A|325
9EHO|1|5|G|326
9EHO|1|5|C|327
9EHO|1|5|U|328
9EHO|1|5|C|329
9EHO|1|5|C|330

Current chains

Chain 5

28S rRNA

Nearby chains

Chain N

Ribosomal protein L15

Chain a

Large ribosomal subunit protein uL15

Chain i

Large ribosomal subunit protein eL36

Chain o

Large ribosomal subunit protein eL42