HL_9EHO_033

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9EHO|1|5|C|2646, 9EHO|1|5|G|2648, 9EHO|1|5|A|2650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|5|C|2644
9EHO|1|5|G|2645
9EHO|1|5|C|2646
9EHO|1|5|A|2647
9EHO|1|5|G|2648
9EHO|1|5|C|2649
9EHO|1|5|A|2650
9EHO|1|5|G|2651

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4 C-terminal domain-containing protein

Chain P

Large ribosomal subunit protein uL22

Chain j

Ribosomal protein L37

Chain l

Large ribosomal subunit protein eL39