HL_9EHO_046
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_046 not in the Motif Atlas
- Homologous match to HL_9PN5_055
- Geometric discrepancy: 0.1085
- The information below is about HL_9PN5_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
9EHO|1|5|C|4226
9EHO|1|5|A|4227
9EHO|1|5|A|4228
9EHO|1|5|A|4229
9EHO|1|5|A|4230
9EHO|1|5|G|4231
9EHO|1|5|G|4232
9EHO|1|5|G|4233
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL16
- Chain T
- 60S ribosomal protein L21
- Chain o
- Large ribosomal subunit protein eL42
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