HL_9EHO_067
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGCGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9EHO|1|AA|C|695, 9EHO|1|AA|G|696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_067 not in the Motif Atlas
- Homologous match to HL_9PN5_086
- Geometric discrepancy: 0.1408
- The information below is about HL_9PN5_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.3
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9EHO|1|AA|C|686
9EHO|1|AA|A|687
9EHO|1|AA|U|688
9EHO|1|AA|G|689
9EHO|1|AA|C|690
9EHO|1|AA|G|691
9EHO|1|AA|A|692
9EHO|1|AA|A|693
9EHO|1|AA|A|694
9EHO|1|AA|C|695
9EHO|1|AA|G|696
9EHO|1|AA|G|697
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain FF
- 40S ribosomal protein S4
- Chain HH
- Small ribosomal subunit protein eS6
- Chain JJ
- 40S ribosomal protein S8
- Chain ZZ
- 40S ribosomal protein S24
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