HL_9EHO_069

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCACG

Length

7 nucleotides

Bulged bases

9EHO|1|AA|G|745, 9EHO|1|AA|A|747, 9EHO|1|AA|C|748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_069 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.2561

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9EHO|1|AA|C|743
9EHO|1|AA|G|744
9EHO|1|AA|G|745
9EHO|1|AA|C|746
9EHO|1|AA|A|747
9EHO|1|AA|C|748
9EHO|1|AA|G|749

Current chains

Chain AA

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S4

Chain ZZ

40S ribosomal protein S24