HL_9EHO_071

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCAAAUCCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_071 not in the Motif Atlas

Geometric match to HL_7K16_002

Geometric discrepancy: 0.3609

The information below is about HL_7K16_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14063.2

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9EHO|1|AA|C|815
9EHO|1|AA|U|816
9EHO|1|AA|U|817
9EHO|1|AA|C|818
9EHO|1|AA|A|819
9EHO|1|AA|A|820
9EHO|1|AA|A|821
9EHO|1|AA|U|822
9EHO|1|AA|C|823
9EHO|1|AA|C|824
9EHO|1|AA|G|825

Current chains

Chain AA

18S rRNA

Nearby chains

Chain KK

Small ribosomal subunit protein uS4

Chain ZZ

40S ribosomal protein S24