HL_9EHO_073

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCUCAGAG

Length

9 nucleotides

Bulged bases

9EHO|1|AA|G|1430, 9EHO|1|AA|U|1432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EHO_073 not in the Motif Atlas

Homologous match to HL_9H3G_091

Geometric discrepancy: 0.2235

The information below is about HL_9H3G_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9EHO|1|AA|U|1429
9EHO|1|AA|G|1430
9EHO|1|AA|C|1431
9EHO|1|AA|U|1432
9EHO|1|AA|C|1433
9EHO|1|AA|A|1434
9EHO|1|AA|G|1435
9EHO|1|AA|A|1436
9EHO|1|AA|G|1437

Current chains

Chain AA

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S4

Chain KK

Small ribosomal subunit protein uS4

Chain ZZ

40S ribosomal protein S24