HL_9EHO_079
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9EHO|1|AA|A|1870
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_079 not in the Motif Atlas
- Homologous match to HL_9H3G_099
- Geometric discrepancy: 0.1074
- The information below is about HL_9H3G_099
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9EHO|1|AA|G|1862
9EHO|1|AA|A|1863
9EHO|1|AA|C|1864
9EHO|1|AA|U|1865
9EHO|1|AA|C|1866
9EHO|1|AA|A|1867
9EHO|1|AA|A|1868
9EHO|1|AA|C|1869
9EHO|1|AA|A|1870
9EHO|1|AA|C|1871
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain RR
- 40S ribosomal protein S16
- Chain VV
- Small ribosomal subunit protein uS10
- Chain ee
- Small ribosomal subunit protein uS14
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