HL_9F1B_016

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

9F1B|1|A2|G|837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_016 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2457

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9F1B|1|A2|C|835
9F1B|1|A2|C|836
9F1B|1|A2|G|837
9F1B|1|A2|A|838
9F1B|1|A2|G|839

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

40S ribosomal protein S9

Chain Ax

40S ribosomal protein S24