HL_9F1B_062

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

9F1B|1|B5|A|1830, 9F1B|1|B5|A|1831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_062 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.1196

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9F1B|1|B5|G|1825
9F1B|1|B5|G|1826
9F1B|1|B5|A|1827
9F1B|1|B5|U|1828
9F1B|1|B5|G|1829
9F1B|1|B5|A|1830
9F1B|1|B5|A|1831
9F1B|1|B5|C|1832

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BF

Ribosomal Protein uL30

Chain Be

Ribosomal protein L32

Chain Bf

60S ribosomal protein L35a