HL_9F1B_089

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9F1B|1|B5|A|3608, 9F1B|1|B5|A|3609, 9F1B|1|B5|C|3610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_089 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0845

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9F1B|1|B5|G|3605
9F1B|1|B5|G|3606
9F1B|1|B5|G|3607
9F1B|1|B5|A|3608
9F1B|1|B5|A|3609
9F1B|1|B5|C|3610
9F1B|1|B5|G|3611
9F1B|1|B5|G|3612
9F1B|1|B5|G|3613
9F1B|1|B5|C|3614

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Large ribosomal subunit protein uL13

Chain Be

Ribosomal protein L32