HL_9F1B_111
3D structure
- PDB id
- 9F1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F1B_111 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.185
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
9F1B|1|B8|C|47
9F1B|1|B8|A|48
9F1B|1|B8|G|49
9F1B|1|B8|C|50
9F1B|1|B8|U|51
9F1B|1|B8|A|52
9F1B|1|B8|G|53
9F1B|1|B8|C|54
9F1B|1|B8|PSU|55
9F1B|1|B8|G|56
Current chains
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- Large ribosomal subunit protein uL23
- Chain Bh
- 60S ribosomal protein L35
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- 60S ribosomal protein L39-like
Coloring options: