HL_9F1B_112
3D structure
- PDB id
- 9F1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9F1B|1|B8|C|81, 9F1B|1|B8|A|84, 9F1B|1|B8|U|86
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F1B_112 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5764
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9F1B|1|B8|G|68
9F1B|1|B8|PSU|69
9F1B|1|B8|G|70
9F1B|1|B8|A|71
9F1B|1|B8|A|72
9F1B|1|B8|U|73
9F1B|1|B8|U|74
9F1B|1|B8|OMG|75
9F1B|1|B8|C|76
9F1B|1|B8|A|77
9F1B|1|B8|G|78
9F1B|1|B8|G|79
9F1B|1|B8|A|80
9F1B|1|B8|C|81
9F1B|1|B8|A|82
9F1B|1|B8|C|83
9F1B|1|B8|A|84
9F1B|1|B8|U|85
9F1B|1|B8|U|86
9F1B|1|B8|G|87
9F1B|1|B8|A|88
9F1B|1|B8|U|89
9F1B|1|B8|C|90
Current chains
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BY
- Ribosomal protein L26
- Chain Bh
- 60S ribosomal protein L35
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- 60S ribosomal protein L39-like
Coloring options: