HL_9F1C_008

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_008 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1486

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9F1C|1|A2|U|417
9F1C|1|A2|C|418
9F1C|1|A2|A|419
9F1C|1|A2|G|420
9F1C|1|A2|G|421
9F1C|1|A2|G|422

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ab

Small ribosomal subunit protein uS5

Chain Ai

40S ribosomal protein S9

Chain Ak

40S ribosomal protein S11

Chain Av

Ribosomal protein S15a

Chain Aw

40S ribosomal protein S23