HL_9F1D_011

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9F1D|1|A2|C|503, 9F1D|1|A2|C|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_011 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2372

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9F1D|1|A2|C|499
9F1D|1|A2|G|500
9F1D|1|A2|A|501
9F1D|1|A2|C|502
9F1D|1|A2|C|503
9F1D|1|A2|C|504
9F1D|1|A2|G|505

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ax

40S ribosomal protein S24