HL_9F1D_014

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_014 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.0921

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9F1D|1|A2|C|619
9F1D|1|A2|A|620
9F1D|1|A2|G|621
9F1D|1|A2|C|622
9F1D|1|A2|C|623
9F1D|1|A2|G|624

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aw

40S ribosomal protein S23