HL_9F1D_017

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_017 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.4969

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9F1D|1|A2|U|886
9F1D|1|A2|A|887
9F1D|1|A2|U|888
9F1D|1|A2|U|889
9F1D|1|A2|U|890
9F1D|1|A2|U|891
9F1D|1|A2|G|892
9F1D|1|A2|U|893
9F1D|1|A2|U|894
9F1D|1|A2|G|895
9F1D|1|A2|G|896
9F1D|1|A2|U|897
9F1D|1|A2|U|898
9F1D|1|A2|U|899
9F1D|1|A2|U|900
9F1D|1|A2|C|901
9F1D|1|A2|G|902

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ak

40S ribosomal protein S11