HL_9F1D_020
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GA(PSU)CAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9F1D|1|A2|C|1058, 9F1D|1|A2|U|1062
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F1D_020 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1392
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9F1D|1|A2|G|1055
9F1D|1|A2|A|1056
9F1D|1|A2|PSU|1057
9F1D|1|A2|C|1058
9F1D|1|A2|A|1059
9F1D|1|A2|G|1060
9F1D|1|A2|A|1061
9F1D|1|A2|U|1062
9F1D|1|A2|A|1063
9F1D|1|A2|C|1064
9F1D|1|A2|C|1065
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- Small ribosomal subunit protein eS26
- Chain AH
- mRNA
- Chain AT
- P-site tRNA
- Chain An
- Small ribosomal subunit protein uS11
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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