HL_9F1D_027

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

9F1D|1|A2|U|1372

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_027 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1187

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9F1D|1|A2|G|1367
9F1D|1|A2|PSU|1368
9F1D|1|A2|U|1369
9F1D|1|A2|A|1370
9F1D|1|A2|A|1371
9F1D|1|A2|U|1372
9F1D|1|A2|U|1373
9F1D|1|A2|C|1374

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aq

40S ribosomal protein eS17