HL_9F1D_063

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9F1D|1|B5|A|1923

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_063 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2593

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9F1D|1|B5|C|1917
9F1D|1|B5|A|1918
9F1D|1|B5|U|1919
9F1D|1|B5|G|1920
9F1D|1|B5|G|1921
9F1D|1|B5|A|1922
9F1D|1|B5|A|1923
9F1D|1|B5|G|1924
9F1D|1|B5|U|1925
9F1D|1|B5|C|1926
9F1D|1|B5|G|1927

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

60S ribosomal protein L12