HL_9F1D_071

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_071 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3188

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9F1D|1|B5|G|2330
9F1D|1|B5|C|2331
9F1D|1|B5|C|2332
9F1D|1|B5|U|2333
9F1D|1|B5|C|2334

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA