HL_9F1D_084

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

G(PSU)UUAAUUAAAAC

Length

13 nucleotides

Bulged bases

9F1D|1|B5|A|3374, 9F1D|1|B5|A|3375, 9F1D|1|B5|U|3376, 9F1D|1|B5|A|3380

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_084 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.2012

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9F1D|1|B5|G|3370
9F1D|1|B5|PSU|3371
9F1D|1|B5|U|3372
9F1D|1|B5|U|3373
9F1D|1|B5|A|3374
9F1D|1|B5|A|3375
9F1D|1|B5|U|3376
9F1D|1|B5|U|3377
9F1D|1|B5|A|3378
9F1D|1|B5|A|3379
9F1D|1|B5|A|3380
9F1D|1|B5|A|3381
9F1D|1|B5|C|3382

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BK

Nascent chain

Chain Bj

Ribosomal protein L37