HL_9F1D_087

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9F1D|1|B5|C|3493, 9F1D|1|B5|A|3495

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_087 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1131

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9F1D|1|B5|G|3489
9F1D|1|B5|PSU|3490
9F1D|1|B5|A|3491
9F1D|1|B5|A2M|3492
9F1D|1|B5|C|3493
9F1D|1|B5|PSU|3494
9F1D|1|B5|A|3495
9F1D|1|B5|PSU|3496
9F1D|1|B5|G|3497
9F1D|1|B5|A|3498
9F1D|1|B5|C|3499

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain AT

P-site tRNA