HL_9F1D_089

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9F1D|1|B5|A|3608, 9F1D|1|B5|A|3609, 9F1D|1|B5|C|3610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_089 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1173

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9F1D|1|B5|G|3605
9F1D|1|B5|G|3606
9F1D|1|B5|G|3607
9F1D|1|B5|A|3608
9F1D|1|B5|A|3609
9F1D|1|B5|C|3610
9F1D|1|B5|G|3611
9F1D|1|B5|G|3612
9F1D|1|B5|G|3613
9F1D|1|B5|C|3614

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Be

Ribosomal protein L32