HL_9F1D_093

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9F1D|1|B5|A|3960, 9F1D|1|B5|C|3967

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_093 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1262

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

9F1D|1|B5|U|3956
9F1D|1|B5|C|3957
9F1D|1|B5|A|3958
9F1D|1|B5|A|3959
9F1D|1|B5|A|3960
9F1D|1|B5|C|3961
9F1D|1|B5|G|3962
9F1D|1|B5|G|3963
9F1D|1|B5|U|3964
9F1D|1|B5|A|3965
9F1D|1|B5|6MZ|3966
9F1D|1|B5|C|3967
9F1D|1|B5|G|3968

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29