HL_9F1D_099

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

9F1D|1|B5|U|4165, 9F1D|1|B5|A|4168

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_099 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1761

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9F1D|1|B5|C|4163
9F1D|1|B5|G|4164
9F1D|1|B5|U|4165
9F1D|1|B5|PSU|4166
9F1D|1|B5|C|4167
9F1D|1|B5|A|4168
9F1D|1|B5|PSU|4169
9F1D|1|B5|A|4170
9F1D|1|B5|G|4171

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein