HL_9F1D_100

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9F1D|1|B5|G|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_100 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1407

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9F1D|1|B5|A|4220
9F1D|1|B5|G|4221
9F1D|1|B5|C|4222
9F1D|1|B5|A|4223
9F1D|1|B5|G|4224
9F1D|1|B5|A|4225
9F1D|1|B5|A|4226
9F1D|1|B5|U|4227

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein